Scaffold Ga0226832_10062058

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10062058
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1308
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F005948	Metagenome / Metatranscriptome	385	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_100620581	F001625	N/A	MALTISTSDWTNSNCRKTLSFQAALVSKLRIYSIKVTFGASDNYASNGVSADLKEGRISTLVAVSPTFTDSKLVVQYDKTNEKIKCFTGSGNGNILAEVPNASTLVNSKIFEFLVIGY
Ga0226832_100620582	F005948	GAG	MVELNHNVVSFNSDTLIKGDHGVLVAVFVTKKGTGSNKVEFRNGTTDSATPIECTIFTAIEGNYQNIHRRFENGIFADCDGSAEVTVVFK