NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0226832_10044702

Scaffold Ga0226832_10044702


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10044702 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1515
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F010477Metagenome / Metatranscriptome303Y
F026902Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0226832_100447021F000615GAGMCRLRLFYECSDGTMGFAEHVMRYEDDIAGFVKHWKTGGRMVITEH
Ga0226832_100447022F026902N/AMNSYRIEYREKGIPGLLYKYVTGTEALLSILLKLKYFDKLENFDNIKVYRK
Ga0226832_100447024F010477AGGAMKIRYIVFVPYLIFIGVMGGNVLAESIVIGICLGTYDLLFRNGGDGGRPA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.