Scaffold Ga0226832_10016341

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10016341
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2405
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F007052	Metagenome / Metatranscriptome	359	Y
F030785	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_100163412	F030785	AGGA	MKTATVEILEEGETIFGSRTRGEYMVRRYEDGIEMGGEFHYTLTEAGAAVRKWENQKEK
Ga0226832_100163413	F001048	GAG	MKIVSTKQFWWRFNHLKRNGAEITVTDRTRPFDLKEWNRIESLVNKRVRWELGSEGYATWSECGYKDIPTLAKAYRIS
Ga0226832_100163414	F007052	GAG	MKNKNETYFVARLINKGKFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFAYELDSEELLKNSTRVL
Ga0226832_100163415	F000615	N/A	VSGLERPENIMCRIRCFYECSDGTMGFAEMVLPYEEDIAGFVKHWKTGGRMVITEHIDLV