Scaffold Ga0226832_10016037

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10016037
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2426
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031531	Metagenome	182	Y
F089026	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_100160372	F089026	GGAG	MTRIKTAYKNHFITEFIEKYSDDSNRQFIQVLKQWRDLEK
Ga0226832_100160375	F031531	AGGA	MFFNPDKKAYYDLIDGQLLAKMEPEVKSAFEDLHTVELEKDKTLVIKQITNESWSDETKEKGVFFIEEKNRTKKGLTLTKSDCGKLAIILKEISET