Scaffold Ga0226832_10008413

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10008413
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3275
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003515	Metagenome / Metatranscriptome	482	Y
F003706	Metagenome	473	N
F015220	Metagenome	256	Y
F100970	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_100084134	F100970	N/A	MTKIQKILLEHYKRLCGPEMASRIMGNHKNNFKIFLGVVEKKLESRKPKENYNGGKEETG
Ga0226832_100084137	F015220	AGGTGG	MNIDAKFFGAILFLIAQTGGAIWWASGLSSEVDRLAGIQGEAIPALEAEAVQCGKAIHDQGQQIERIKELTAETSGLDVLAFKVEELRKEISGLREVDKDIMTQHEKIFEWMANSSPMQQKGNPYN
Ga0226832_100084138	F003706	AGGA	MSEVSDVELGKLIQQISTLEVMVKEQNIRLDKLDQQLERTRGIGIGIVLATVGLSGVGASLFTRWLGQ
Ga0226832_100084139	F003515	AGG	MKKIVTGLAVAMFCLMLYEVKAGPPQGMERQMIPFPAMCLPATAAQNHFATLMGALITDYGVHISMTFSASPDQSKRVVIIENPHSGLAGVLMLTDEKTCIAFSGEDRKHFIRPPDHPMGELNQDTET