Scaffold Ga0226832_10006827

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10006827
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3613
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F002348	Metagenome / Metatranscriptome	568	Y
F010791	Metagenome / Metatranscriptome	299	N
F026902	Metagenome	196	Y
F033080	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_100068271	F010791	GAG	MSFEFRAGRKRVVKSVETVEEANELMRRMIAIRNENSLWENIDVKTGHLRAVDELEKLVGTIFDVFDTMSIYMNGKSVRRIWSRGF
Ga0226832_1000682711	F033080	AGGA	MINVDKIAEKVANEPLEDELRNWIIGETEDGHMPLVRKPQHVIDEEKVDEAIMTRHDQRQWDMYHDEMWNWSGMR
Ga0226832_1000682712	F002348	GGA	MKPNEKWMKYGGWMLSLLTILIGVSFIWPHFHVALLGFALIYLGVRIFNFSTFEEYREKRIKLLHRLMD
Ga0226832_100068274	F026902	N/A	MNKYRIEYKEKGIPGLCYKYVTGTENLLSILLKLKYFDKLESFDNITIYRS
Ga0226832_100068276	F000615	GAG	MCRLRLFYECSDGKMGFAEHVMRYEDDIAGFIKHWKTGGRIVITEHIDLV