NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10005152

Scaffold Ga0226832_10005152


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10005152 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4095
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003270Metagenome496Y
F008691Metagenome / Metatranscriptome329Y
F040141Metagenome162Y
F041246Metagenome160Y
F093971Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0226832_100051522F040141N/AMRCKSHIFIFKTDKCMKGSYDFMKITGVCYYCMRYIKKMYGLTESDLLKDNFYKKFISTDKDFLQTIHNF
Ga0226832_100051523F041246AGGMKYVIGITKRFSYTKSQDHTRKGRKHYFCYEFDVESSKFKRIRISTIKAIYYKITFVFGLKSKKITNIYCKDCRKSHNSYVNFWDKDLSCPYC
Ga0226832_100051527F093971GGTGGMSESKKSKKDESENFIDTLKDLLEDPHQDEAWNERFKATVRKYFDI
Ga0226832_100051528F008691N/AMVLGYDVKEEATEVKKNLFENRDSFVMLVVAGVVGGIITRFVIPKSVTEGSIFNRFKSWFGYDQEEYEEEE
Ga0226832_100051529F003270N/AMASRKRRRRSSKKRNGSKSIKSMIRQVVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGVAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNPGGYVSTSNVSPNVMVQNRAQTNRSFAQAQSNRSYVPLDSFDSSTGSAFR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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