Scaffold Ga0226832_10003179

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10003179
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5145
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011590	Metagenome / Metatranscriptome	289	Y
F015479	Metagenome	254	Y
F037763	Metagenome / Metatranscriptome	167	Y
F046423	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_1000317913	F046423	GAG	MSPTEAAYVAGIIDGEGWVEFRYVNRTRNTRPGKPTYRTLIIRMEVPQVDGRLIDYLMTTTDEGNRDLKKFPKHPTYQTQHRWRVSHHGVYRVLKQVYKHLIVKKEKAKLVIDYYDEKFSRKTFGKGGFGVK
Ga0226832_100031793	F037763	N/A	MSRKITLNIKGESRKQYTTLVLELNVMAKAWSRYGVDIQLPGQEKTINWGQKTGKEVSTEAPE
Ga0226832_100031795	F011590	GAG	MSYKEICSLCQGNGYITIVVKGQDETKQCWLCESKGEKEYSQAEVDDFIYKMYYKKGEPNAV
Ga0226832_100031798	F015479	N/A	MKILMIIATGTIITFPMDERVSPDCLSQGYSIMEKISTYQGPGPDQGWYLKGKPIQVAGWYCE