Scaffold Ga0226832_10001882

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10001882
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6602
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002330	Metagenome / Metatranscriptome	570	Y
F004879	Metagenome / Metatranscriptome	420	Y
F039829	Metagenome / Metatranscriptome	163	Y
F101302	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_100018822	F002330	N/A	MIICDIMLKQIKQINKTLKIGDRFTIYYAPTFTKNGEDQTTIYDPHQYEVNVRSAIWDEKCKINKTGSLTYFDVEKNSHRTAIQTLQPVRIYLNKIMYVWKEGK
Ga0226832_100018824	F039829	N/A	MSLKVKDVIRELKKFPDNYKVSLETYNESKDNEGGYDKTNCISVDKDEDAENFVVIK
Ga0226832_100018825	F004879	N/A	MSKNNEMQLWKRDHFESKIDKLLEPEIEREELKIKTTVNKILDKGIKSFSKSIGADKVIARLEKAEHEKREASRLAYTFFNNKASSVVSYNKAKEYKFDRDEKDTISVRDCTKQLEKWAEKQAEQYAETTEQGKRLNFLKTLRDSCKDKVKEATVSDELKATLDNLMKMVGVSWERKLPALPKPKK
Ga0226832_100018828	F101302	N/A	MGDRVSISFQQKADWYVKGKKEEHLEESPVLFHHWGGTDFPKFAFDWFKALRKHLKKNHTGSDPLTRLEPRNLMVQFINAIRDEEAFRLHHYENKTKDINGGTWSIDDNLLSYSIYLGKDSNDGDNSDNGHYTIDVDAGKMFDDKGQSIG