NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10001005

Scaffold Ga0226832_10001005


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10001005 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15564
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001594Metagenome / Metatranscriptome666Y
F007647Metagenome / Metatranscriptome347Y
F008755Metagenome / Metatranscriptome328Y
F009404Metagenome / Metatranscriptome318Y
F091856Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0226832_1000100511F091856GAGGMKKDSIIVITCSVCGEMSHAIKNDRLPEGYRIKESGVVICRICFGGLK
Ga0226832_1000100515F009404AGGAGMSSEEPEEVIPKGESLIKHCPCCGLEFSETVLTNRWLKCGSCELTFQVRSKGSD
Ga0226832_1000100516F008755AGGAMNKSRVARDLWRKVFNDNIIDLKDGDARKQVVREFLNDPVNKKSGWKSKDARFFRLGFNTVAKENNFNPLSVGVTPTPARSKTTKGSMNLNVKSKEKKIPPIVEELQDKKKDERPKFGALPQTPQLQAQQDQASYYSAQSVGQIFETLFNLFSTRTGCSPLTQNEKIALGEVWTPIFNEWFSGEEKAKWVMIAIVTLPIVLQRVAEISKNKKEKEIKERYGMEDIPKDPPVKKKSAWENMSHGKEKTE
Ga0226832_1000100517F001594GGAGMEKKKLSKKEYLDSLDPDNLNLEKSDLINFCHKCIDEWKKNKIGNFKYIVAMELMIGAVKITSDDVMKTVWKKILVWFWELQYQNALKDKEGMLRSFAKIGSG
Ga0226832_1000100518F007647AGGAGLDQVRISQVVNLFFDSLKSKDDKMLETGLTQNTTVDLLHQATLQLIQEHPKRFEQYIRFFEMGCMYLQNDSEEVPNFE
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