NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10000698

Scaffold Ga0226832_10000698


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10000698 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10849
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025390Metagenome / Metatranscriptome202N
F047120Metagenome / Metatranscriptome150N
F047309Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0226832_1000069816F047309AGGAGMAKLTPLQKVQKELDKLAALHAKEEAIVGKIEEIIEEAENEE
Ga0226832_100006985F047120AGGAGMFGVKTKQLTASGQVTTKVSAGSNTLSAPARVLGLTVQCGATEGKIDLVDDGASGTVKFTQVTPAIKAGAEDMLQFDFPEMGLKFDTDLYVYFNHATKVNVIYG
Ga0226832_100006986F025390AGGAGMTTHFNNGVTNVVKDKSPLKNAMMPDPFPVTNTQGGGYDFLGQTSFMDDFYSAITRTNTSNNGRGSPGWYLSQTASTQTAAPIADAVGGWLQLDEVNATNDAYNQINTFTAFQLSTSMNAGFEARVAVEDISATEMVLGFVDTDVTSGVVNITDGLYFSNFSDPDSITAGTSLYLHCEKNGTITSSSALVDPYTGDTFVIEDGALQTASATQLATPSNSFIAGFNIVPKGSNGNVNTAVIQAYLGPVGKQPLPVASIATTNLPDDLALGLMMGTKNNTTTAAIMWVDYIKMISSRSFGSSTTK
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Institute for Fundamental Biomedical Research
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