NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10000434

Scaffold Ga0226832_10000434


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10000434 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13860
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (76.09%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013700Metagenome269Y
F023368Metagenome / Metatranscriptome210Y
F026709Metagenome197N
F040683Metagenome161Y
F043453Metagenome156N
F058216Metagenome135Y
F061266Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0226832_1000043414F043453AGGAGGMSEQIKIVVDRQNKHGTDFYYPVCELSQTLVKLKGNTKKVLTKSDMFLLSKLFDINLKEQKVF
Ga0226832_1000043417F026709AGTAGGMYIILIKDNHRYKLYTNEIFNLLNEAIDYAKRCKIKVKWKVVEFDYKYFKS
Ga0226832_1000043418F023368AGGAGMHRYNKATTKYKDVPNEEKFLIALDKIDTYEAEVLGMQLAHLSMPQMCASWVSEEHFNNLLEKYKIDLTPYVKDDTRITTSIKSEIAIELFRLIDSDKYKKRNLIKALRLKFPDVNSGVICRLIKKYLSLRILEIDRTYKTKPFVIKGKYYVGG
Ga0226832_1000043420F058216AGGAGGMNKTIGQLIKEDHWSTRRLAVAMNITKEDIRKWEKSNKPYKKLKKKSYLW
Ga0226832_1000043424F013700GAGMDFKNLAYPFEDVGDAPFNVVRILNECYNDYSDGNLGDGEHMASGGMVRQEFLRRIAQLGYDELKYKDIADKLEEDVDENNAHLYSKYYEPSETNEEDE
Ga0226832_1000043429F040683AGGAMKKYRVWGYEKQGYYIEVEANNKQDAHDKAMDVDRLDWEMGEDRLAMFNINLKDIEKIDE
Ga0226832_1000043433F061266AGGAGGMFGTKKEEEQKLKRFMVMCKSKRGSTYYHEKSFYTLADADAYANLIRRQEDESGNEFYLFEQSKHYGNGEDKK
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