Scaffold Ga0226832_10000382

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10000382
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14595
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F005148	Metagenome / Metatranscriptome	410	Y
F007267	Metagenome / Metatranscriptome	354	Y
F091856	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_1000038211	F007267	GGAG	MKLKVFCCPECRLRKFESINALNVHISKSHLVDYKIVMKENKPYRKRKIRGSVNYLKK
Ga0226832_100003823	F091856	GGAG	MKKDEVIIISCSVCGEMSHAIKNSKLPEGYQLKTSEFIICKYCFGDLN
Ga0226832_100003825	F005148	GGAG	MKQKKYHEHLRRTLPEEEEIECQNCKQKFCDQFNLLSLATLNFCLLCANKKLDKETIKEKYHVE
Ga0226832_100003828	F001594	N/A	MIWDLEKTKLSKKEYLDSLDPDNLNLKKEDLLNFCHKCVDEWKANKIGNFKFIIAMELIIAGIKITGEDVLKAVWKKILVWFWDLQFQNALEEEDGMLKRLREIGSG