Scaffold Ga0194054_10178666

Overview

Basic Information

• Taxon OID: 3300021605
• Scaffold ID: Ga0194054_10178666
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L227-10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 715
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.688
  • Long. (^o): -93.689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051331	Metagenome	144	N
F061478	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194054_101786662	F061478	GGA	MEVFHQIRVGRLRLYNAAARDRLGIVQETWKRGALGKTFLVRPIAGQIVGEEVVENTGRVIAVFGLAITNAFLPDPRPQREYREKLQTLLNQL
Ga0194054_101786663	F051331	N/A	MKNLICLAMLLLAPLSHAGTVKMWDGKRRGMDLVTVGHKRVTVFLADGRTTVLGIPILVEKPKAAVPVTGNRPATPKR