Scaffold Ga0194060_10136609

Overview

Basic Information

• Taxon OID: 3300021602
• Scaffold ID: Ga0194060_10136609
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1314
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002433	Metagenome / Metatranscriptome	559	Y
F005503	Metagenome / Metatranscriptome	398	Y
F007799	Metagenome	344	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194060_101366091	F007799	AGGCGG	MSFLDNYEDVAARIQRFWATYPNGKIHTSIMDVNLEKGYVLVECRIYRNYEDQEPAGIDYAFGNVNTYNVQMKKWFIEDTCTSAIGRCAGLVLGTDKRPTIQNMQQVERIDPKIVQDSAVAYDYWSTKFGDVPSFKTREEAEEAGIPTLGTAIDTIKETLGGVQVAAAPMCAHGHMIW
Ga0194060_101366092	F005503	GGAG	MTTSEIGLFVLMAIACILWAIVSYSMGYKEGHKEGYQRGRAVTRHISQKAAIK
Ga0194060_101366093	F002433	N/A	MSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMREFQPNGGNSLKDQVSRIEARLDQLMLEIALKK