Scaffold Ga0194060_10000005

Overview

Basic Information

• Taxon OID: 3300021602
• Scaffold ID: Ga0194060_10000005
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 166256
• Total Scaffold Genes: 251
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 165 (65.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F058120	Metagenome / Metatranscriptome	135	Y
F071209	Metagenome / Metatranscriptome	122	Y
F078676	Metagenome / Metatranscriptome	116	Y
F097281	Metagenome / Metatranscriptome	104	Y
F102589	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194060_10000005118	F078676	AGGA	MVQKIHGAATAMQNLTADLAFYVCYASSPGAFTDPNPNPPPSEELARLINIQVTGSPLDQSQKNFEVFLMSIGLRAMPVVLSDPAAVLQLADYTPELSGEGFVWKFAVERGVQFYNFTPYGTPGPVGLLVDDLNGVIIPSGVRITTVTGSPSGWLKNIAFSRMATI
Ga0194060_10000005162	F055453	N/A	MKFKDLLLESPTDVVARFYKEAGKDYEKFYNPEVVKYQKKNAKYYDEYFKEWFSEGVVPVFMKPVTKSQPEYTNVPKESKLQSPGYRGLQYALAAAGLPYNHKVQRYEPNPSKMLTAQTMDAARNNNGQ
Ga0194060_10000005167	F071209	AGG	MEKDMYVPMNEMNLHKDIVWTCTHLNIPYYEIARRGIVMWCVDNLEAHWTMLGGNKFGFEDSTDALMFKIQFGLGS
Ga0194060_10000005173	F097281	N/A	MIKQITKLETANLKEKNAIHSFRVTIRDREHFYKIVNWLNTNVGKGSDKWTMEGRVLKTISTGKTVSPKIYIFQEDFDTGSALYLSLI
Ga0194060_10000005233	F102589	N/A	MLPLKAAIFTEVRSKYETAASLDDNQLNKLLFHHPDGVRLSLTGFIIVKSIFTVYSFELPDTIKSRHQRAMSKIDYPYFVTKKRLILFSESDAITIKLCGDVERFLETYSTFDR
Ga0194060_1000000599	F058120	AGAAG	MTKMTTPAIEFGEAMLSTINSKDVLKSVTQIQQFRESMKDPAVGADYVVWISEPVNLTRVHKALAEDLNVPPRAMMIKRVLMSRTQKAVLLVQAMEIAVKRVHGL