NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194059_1078627

Scaffold Ga0194059_1078627


Overview

Basic Information
Taxon OID3300021600 Open in IMG/M
Scaffold IDGa0194059_1078627 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L626-11m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1046
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.753Long. (o)-93.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010236Metagenome / Metatranscriptome306Y
F024783Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0194059_10786271F010236N/AGRIVAVFLSSALAIVGGSAVIAPELQIWKSAVLAGFAACATVVQKLAQASLDGNLTMEEINDAFGAKKK
Ga0194059_10786273F024783N/AMMDWGIVAAALITAVGGVITALLMRVRKENTQDHARVVSALEVLSGNVSNIGTKLDSHIDWHLKGTTNGETIAGNKSPKPKRNLK

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