Scaffold Ga0194059_1015718

Overview

Basic Information

• Taxon OID: 3300021600
• Scaffold ID: Ga0194059_1015718
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L626-11m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2702
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.753
  • Long. (^o): -93.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F038673	Metagenome / Metatranscriptome	165	N
F068841	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194059_10157183	F068841	GGAGG	MIELAINGWILTVQGRICEEKYVYTIEAVDNWLIANHIEELGDYLNSTTTGFGDCSIREFDGINSEAFFNAEPTKFQVLFMIGQRTNFF
Ga0194059_10157185	F002909	N/A	VAQIDLSKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPIWANLDANGTNASSKLRQSFAPGNITKSPTSINTILLAEDYWEFVEYGRKPTRGGHIEGTPYLWQSLKTWISQKGIKPAEGQTYDSLAKAIAKKIHRSGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI
Ga0194059_10157186	F038673	GGAGG	MGWKIYTKRNGILTSSLKPKKNNRQKVLLCRMWFLLFLIPLTSNGQVLIDTCVIQEANHYLVKGAIARRQVTVLRKIVTSDSVIISEQDSIIVKQKTNIRYLKEDNNALVKRNKAISRTLISYKMLSVVLTILSVVMWLK