Scaffold Ga0194059_1003063

Overview

Basic Information

• Taxon OID: 3300021600
• Scaffold ID: Ga0194059_1003063
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L626-11m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6666
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.753
  • Long. (^o): -93.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049433	Metagenome	146	N
F082686	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194059_100306311	F049433	N/A	MKKFIITEEEKSRILGMHQEHGYNSLNESPSGVGFGPEMNGLKIQKSEQKEQDVEQINDPKIINAVNTVLKKLMMSPKFSTDDTLFSLIEKGDLIKAYRLHRNLNDSVNYVDYELLDDMLNNPETKDSIVKLLPNIKSLLTNYFS
Ga0194059_10030636	F082686	N/A	MGRLILTEDDKNDIKLQYQGSVDKKFYDFLKANVEVESRNVDFSDKPFVLMYVNGKSRLLNNSKKYLVNVLLNAYGDDFPNLNDASKRLTAKKYIDELKKQYFYED