Scaffold Ga0190354_1000021

Overview

Basic Information

• Taxon OID: 3300021590
• Scaffold ID: Ga0190354_1000021
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29124
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (70.97%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036512	Metagenome	169	N
F040420	Metagenome	161	Y
F055334	Metagenome	138	N
F076704	Metagenome	117	N
F084956	Metagenome	111	N
F084957	Metagenome	111	N
F102256	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190354_100002112	F084956	N/A	MKRKRTRAICGIAICGYTICGDTSYYLPTVASSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPFTDDNATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTIMGKGNIMSELNCVSRFDELAHRYLKEGDQKDFHGTLSEVIQQFMSVAGMDIESKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEVTLADLVYPVFGKVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190354_100002117	F084957	AGGAGG	MEMKLEDYKKKNNTKKIKCPSGLEVTVNNITPYTLLKVVDNLGINPTREAVYTKPVIDALFKAFLKEPVIGKDIEMEDFLREDYIFLHDLIMERVMMPEE
Ga0190354_100002121	F076704	GGAGG	MPEFGAVKGWKNRVRIGLESTPNESIWHDGRDPLLNSLTMDTSVDIDKVFVVGSRDAVSMIEGVQEVTGTLERNLYSKNATYNEFIYAGNNSYLDLLTATGMYGESLQSCKILMNTTSSSDSADYNRVIYGVKFHSYRTSTAAGDLVTESVDYDATNISTH
Ga0190354_100002123	F055334	AGGA	MTSLVDKLNSVMDTLKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPIRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLRDLDAIMEKLRTLRHDDSKWFELDYKGGIDLEYSPIEKWILQSAVVHVKVEA
Ga0190354_10000215	F102256	N/A	MSHCKLKVYSCKNCYLEFYYENHITHCPFCGDKLKYVGRIQENEIEGPIYTLKYSTGEKMQKKIEEEEAIKEAEESWYLWEE
Ga0190354_10000216	F036512	GGAGG	MYWKVPDYLKKYVRIQDMLRNIFRPCDCGEELKKCEKDKKYFARRAETLSKALAKSISLPKPPDPSKEMEEVNPWKFIAKYGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWRVNVSDCDDYALLMASFVAAVFAKPYYDKQVAFAISWSHNHAYNSFITSEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190354_10000217	F040420	N/A	MVYGIVKIFGLFAIGILLSVSLSQFLMMDSIDSHPYIDGTYVCRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLGHSIEIIEPQTDEIVGCVKEDNKNYVRIPVWNDCLYYSNIKIA