Scaffold Ga0190355_103328

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190355_103328

Scaffold Ga0190355_103328

Overview

Basic Information
Taxon OID	3300021589 Open in IMG/M
Scaffold ID	Ga0190355_103328 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-13-14_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1146
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)		Depth (m)	2011
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036512	Metagenome	169	N
F040420	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190355_1033282	F040420	N/A	MDTTDTHSYIDDIYICRDFSRDLILSASKHHIYLDYIYVPAKNHMVVGLYNPLEQSIEIIEPQTDEIVGCIKENNKHYIRIPVWDTHVYYSNIKIA
Ga0190355_1033284	F036512	N/A	DKEYFAKRVETLSRALAKSINLPEPPNPSKEMEEVNPWKFITKYGKYDILTADKYYYTLPLNTWIKILSSIQTQVEKILPKWRVDVADCDDYALVMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITSEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG

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