NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_11682027

Scaffold Ga0126371_11682027


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_11682027 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)759
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059816Metagenome / Metatranscriptome133N
F068622Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0126371_116820272F068622N/AMAELSIYRVVVRARKKPIGTYTYVITRTDDPNWSESTGESYSTPEAASEAGWLALDRIRATKKADQS
Ga0126371_116820273F059816N/AGPRMQVHVFESMTEPDLYGFTSDRSGNNLPTRGEWKYFKTIDMAVGETPRWGVSTEKALEAIEKDGFY

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