NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0126371_10476757

Scaffold Ga0126371_10476757


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10476757 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1395
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009379Metagenome / Metatranscriptome318Y
F025424Metagenome / Metatranscriptome201N
F038781Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_104767572F009379AGGAGMPNGPGPVPVWSVKFFRDLRSLSPTRLAYISRSSEAEVAQRALECMADEEAARVEICRVLLNPPILAEGAEYWLD
Ga0126371_104767573F025424N/AMPDEIARLAKVLEPSFTAFGDAVLAATMMVVALRSEFSEPMKKEDRPRYRAALERLPKGSTAIPRVVFVNPYKQKTDLHWRVTFTVGPTRYESSRRFGSVVEAETYATDFLARLRREINR
Ga0126371_104767574F038781GGAGGVTIYHVTLRDRQTQTVVGYYNGAWTTDRRRALALRRRE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.