Scaffold Ga0126371_10292824

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10292824
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1753
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000461	Metagenome / Metatranscriptome	1108	Y
F002604	Metagenome / Metatranscriptome	544	Y
F014436	Metagenome / Metatranscriptome	263	N
F017052	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_102928242	F017052	GGA	VVRVKPIDPAAPNLRFQLSDGSVDLMKSFTLDGFDGVGGAWKIPPTDETFDARYGRW
Ga0126371_102928243	F000461	N/A	MTALTAMDKLLFWLGLGAAQKVAGSNKRTDSRHWVISLVAGILLALLIAAGAFILLVSQQ
Ga0126371_102928244	F002604	GGAGG	MLIKLSIISAVAAILMIPTALSAQMGGAVNPGVRVGGAINPGATVRGAVERGIPGPDLGTWRSPSRQVHRSRKHTAAKPRR
Ga0126371_102928245	F014436	GGAGG	MEAFLLLVTWLAYNQPPSHYQVPFSSKEACEAARPQLIKDAERIGQSMIERATAQDRQIGGNNKTALL