Scaffold Ga0126371_10260247

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10260247
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1852
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024457	Metagenome / Metatranscriptome	205	Y
F049197	Metagenome	147	N
F051044	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_102602473	F024457	GAGG	MKTIKRSKVIRACNGRCQVGDIVIFDVLGAVPRGSGATEAVARDAVRRLAEALRAPYEDFNGEAFLIVPG
Ga0126371_102602474	F049197	AGGGGG	MVREEARRTLLREYDNWAKHHPDDATKVFFAYLQRERSDLLDFHAVGGDKWATVHGWLYYTGRVKD
Ga0126371_102602475	F051044	AGGCGG	MMRTIEFVYYLFWIAVLIAALHVAEVRPWAERFALIFWPILIGESIWFFAS