Scaffold Ga0126371_10241214

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10241214
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1918
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061109	Metagenome	132	Y
F067307	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_102412142	F061109	AGAAGG	MPRAFNNLSSRNKFAKRHYEAIATAIQEARRRASDGDNNHDPITNVVDELCWLFRSDNGQFSRDRFYRACEPGANVRARS
Ga0126371_102412144	F067307	GGAGG	VRALLIVMAIALGGCAAQHLNAAQYTRTDGKPVDPAHQQAALAQCKGEAVSAPPDPQCFDCGWKEKTIIAACMARNGYIQAQQ