Scaffold Ga0126371_10161466

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10161466
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2311
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003919	Metagenome / Metatranscriptome	462	Y
F031185	Metagenome / Metatranscriptome	183	Y
F041989	Metagenome / Metatranscriptome	159	N
F058493	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_101614661	F041989	AGGAG	MSKVENLQTTNRAEPFPCVSVALVVLAMFVLSWLAAQGVRNNLQPLLIFAGLCLPIFIAELRNHHNKWAIIVFNAVPVITYAFGYLVLRGPVLTGSMVLWLAGFGVSICIWFAVLVWACTRVRPR
Ga0126371_101614664	F003919	AGAAGG	MKLVPPDTRLKDYKKRRSAFLQELIASTPNVSVRAKEFRRWIDENSPYGDNDEV
Ga0126371_101614665	F058493	N/A	MTKFKTRVDLALSLDADWPLRQPATLTELVAEARALDWDFTNWCCASGYDATDPDARRMF
Ga0126371_101614666	F031185	N/A	MLKTLIIATVLLPTLAFAQRPQQLPQPRQPGQWCPVGWIASGSYCVPGSDKPGAARGIPS