Scaffold Ga0126371_10130653

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10130653
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2550
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001529	Metagenome / Metatranscriptome	677	Y
F002246	Metagenome / Metatranscriptome	578	Y
F013790	Metagenome / Metatranscriptome	268	Y
F017946	Metagenome	237	Y
F025195	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_101306534	F002246	N/A	MHCALLAKRRSWSFTPMGDDDEIHLHVTYASHVDMDEAFCACMRIAIAAGLENVPIGVVTTPGTQSPKPLASSSLADMDF
Ga0126371_101306535	F013790	N/A	MRTNRTPDQWRNWCLARERIDKELREYYQACITRELPPQLLALSKKLGEELLKSKTDSAVAF
Ga0126371_101306536	F017946	GAGG	MLHKEPYPKFELIGSEGRFSGLRHLRYGTGHDDPMPFTLTLTPQYVAREIKKALPVSFLRVQRYAERNADKLKSIAKLERERGLNTHTLE
Ga0126371_101306537	F025195	N/A	MRKIEEYQQHAKHCRALAARTTTRPEDKVTLEEIAKAWEKVAALRERDLHEADE
Ga0126371_101306538	F001529	N/A	IGHRCVSVGTKMGTSKMNRRDQELLDKQMRRLAPPRNEGAIAVMLAAMFLVGMTLSSVLSPHQSAPTQISAPSQIASLE