Scaffold Ga0126371_10101164

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10101164
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2872
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053460	Metagenome / Metatranscriptome	141	Y
F067307	Metagenome	125	N
F102296	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_101011642	F067307	GGAGG	VRAFLIAMALVLAGCAAQRLNASMYTRTDGVPVDAAKQQAALAQCKGEAVRAPLDPQGVDWGRKEKIIIDACMARNGYIQAQQ
Ga0126371_101011643	F102296	GAGG	MTSEEFLAELETLDVGVVKQRIASGAYLRPYRDLAQGWVEHKEAIASAEQMALARQAVKDAKWANWIALWALVIAAISLIVAAFKH
Ga0126371_101011646	F053460	GAGG	MVILHFLATLLWIAMLIGFLVAVFWTIAIVVFGRGFKRFVHGDQIKEIEEKEDVAH