Scaffold Ga0126371_10081643

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10081643
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3173
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001967	Metagenome / Metatranscriptome	610	Y
F034785	Metagenome / Metatranscriptome	173	N
F042093	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_100816431	F042093	AGGAGG	MIKQVIDGKAYNTETARCLATVDLMGYRMDERGRLTTNTPKKVGTSSLYETRAGAYFLVRDYDSGSAVADPDVAGQLRIHDRGVIPLKRKEALGWAESKALDSDKVEELFGKVAEAGGQEAAVLLRVPQTLKLAIEKSAAVAGISTNTWLMRCAERAIASERE
Ga0126371_100816433	F034785	N/A	MSKENENNDPTVEGLNPPTLFREFAAECMELAQTSPTPEKRSLYMKMASLWHQIAQRWERGVLPKSKKTLPRCPKCNEPMRAVEYATFNCVPCEITLSYGNHEDEDDR
Ga0126371_100816437	F001967	GGA	MEEYHRYPLRVQQSKLDGWWFIFVDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVADVEIVRSEKPALHVFH