NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10067464

Scaffold Ga0126371_10067464


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10067464 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3469
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005957Metagenome / Metatranscriptome385Y
F011427Metagenome / Metatranscriptome291Y
F037399Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_100674642F011427N/AMYLRENLGRGSSEDYRLGAAVGILLAAYAGFFLALYWLMQPSVAANPGLAAYRPPPKTVVHYADSPWVPPAPSEALAIPTAIEPAPEIAKSSVTEEPKKETKKQERRTAPRRAHAAQPNPYSGHASSRSFGFRPWF
Ga0126371_100674644F037399AGGAGMKILAMLVFAISLIGGTSVVQAQSSRDLTEPTGTEANRLRTQAGGYYGGGYRAYAYAPRLHRRHWSHRRW
Ga0126371_100674645F005957GGAMSTGACLYALIAAIKQSPILVRMSERLLLARAWASVRKSKDVDAYVLAWIASHVRGPRRPRTLM
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