Scaffold Ga0126371_10044378

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10044378
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4228
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001529	Metagenome / Metatranscriptome	677	Y
F005100	Metagenome / Metatranscriptome	412	Y
F013790	Metagenome / Metatranscriptome	268	Y
F025195	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_1004437811	F001529	GGA	MNRHDQELLDKQMRRLTPPRNEGVIAVMLAVMFLVGMALGSVLSPHESAPTQIASIE
Ga0126371_100443783	F005100	GAGG	MSDDEFHRVTEIERIANGKPTHSKMDEAFRARMHRAIAAGLESAPTGVIITPGTKSPKCVSDLPSRQSRRR
Ga0126371_100443786	F013790	GAGG	MRTNRTPDQWHKGSLARERITKQLEEYYRTRTTGELPPQLLALSKQLDEELLKKREVIAPIA
Ga0126371_100443789	F025195	GAG	MRKVEEYQQHAKHCRALAARTTTRPEDKVTLEKIAKAWEKVSALREHDLHEADE