Scaffold Ga0126371_10042162

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10042162
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4330
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001000	Metagenome / Metatranscriptome	809	Y
F009161	Metagenome / Metatranscriptome	322	Y
F016485	Metagenome	246	Y
F020965	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_100421623	F001000	GGA	MRLVACLIMCLMLMMANAALAEDAQAPSEPQAYCVNRSADFYPYRGEPCKSGYQLGSGNCRKTDGHIVAASKEECAAMAGTVELPVEGGRRPLEQAPKSIK
Ga0126371_100421625	F020965	GAGG	MKSPLVIVLGALVLVAVSTLAVMNNACKSSQHAWCAPMSSLQHHIKTGRS
Ga0126371_100421626	F016485	GGAG	VLGYVFGVIMAFSAVVALALGLFNVTAAVNGPRQHRPVIAHTVAVETQRHSPVAKEASAAKDVTLVVATAAETNKTKHHKHKVFARQRDNYGYWNARGYAQRGFFFR
Ga0126371_100421627	F009161	N/A	MFALSDSQLRTIWNAADRVPFEKRGVFLERVAARLQVLQRGLTDADLDDAVRVALTGLIQSAA