Scaffold Ga0126371_10030173

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10030173
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5069
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → filamentous cyanobacterium CCP2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002246	Metagenome / Metatranscriptome	578	Y
F022479	Metagenome / Metatranscriptome	214	Y
F065321	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_100301731	F002246	N/A	MALALGFGILYAPMSDDDATHLHATYASHLDMDAAFRARLRIAIAAGLETASIGVVTMPGTKNPIYVPTELPPLASSLSDRDFA
Ga0126371_100301732	F065321	N/A	MRIILLIGNALLLAFFAYVVIDSSIIHPHKEAILDYVIVYGIFIYLIVNFIYLIRPQRK
Ga0126371_100301734	F022479	AGGA	MRKISLEQKADIIRRIQVKKPDGTWAVTYRDIAAEFAVSSCLISHIAKRAGLPQRERGPQPIPFAGKRYHPPAQLWDMYQQLRDKVGMAEARRLIEDHIRIRGISYEQVGSSVDGERLAA