NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10030173

Scaffold Ga0126371_10030173


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10030173 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5069
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → filamentous cyanobacterium CCP2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002246Metagenome / Metatranscriptome578Y
F022479Metagenome / Metatranscriptome214Y
F065321Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0126371_100301731F002246N/AMALALGFGILYAPMSDDDATHLHATYASHLDMDAAFRARLRIAIAAGLETASIGVVTMPGTKNPIYVPTELPPLASSLSDRDFA
Ga0126371_100301732F065321N/AMRIILLIGNALLLAFFAYVVIDSSIIHPHKEAILDYVIVYGIFIYLIVNFIYLIRPQRK
Ga0126371_100301734F022479AGGAMRKISLEQKADIIRRIQVKKPDGTWAVTYRDIAAEFAVSSCLISHIAKRAGLPQRERGPQPIPFAGKRYHPPAQLWDMYQQLRDKVGMAEARRLIEDHIRIRGISYEQVGSSVDGERLAA

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