Scaffold Ga0126371_10024250

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10024250
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5624
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001327	Metagenome / Metatranscriptome	721	Y
F014106	Metagenome / Metatranscriptome	265	Y
F036515	Metagenome	169	Y
F053460	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_100242501	F036515	GGAG	MPDQALHFPSERETTVASILKSRHHLWRLPCDLHDTASRSRETILQSLDLIARVDKVLAR
Ga0126371_1002425012	F014106	GGAGG	MARTIILAWVIGVLGLVMVLVGISGIVDLFRQEVRAPLRSYGGAISMICGGVVMWGVAQLLRLELLILMHAH
Ga0126371_100242505	F053460	GAGG	MAILSFLATLLWIAMLIGFLVAVFWMIAIVVFVRGFKRWVHGDQIKQIEEDEDLAY
Ga0126371_100242507	F001327	AGGAG	VAGLNWKRISNRDCMRRQGVEDVKGKAPVLEPSEKPRHKVSKAELRGQAAAAFLAWRAGQTSKDK