Scaffold Ga0126371

Basic Information
Taxon OID	3300021560 Open in IMG/M
Scaffold ID	Ga0126371_10000195 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021560 Open in IMG/M

Scaffold ID

Ga0126371_10000195 Open in IMG/M

Source Dataset Name

Tropical forest soil microbial communities from Panama - MetaG Plot_4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46485
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (81.13%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

46485

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (81.13%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Panama

Coordinates

Lat. (^o)

9.1086

Long. (^o)

-79.8436

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000438	Metagenome / Metatranscriptome	1143	Y
F022248	Metagenome / Metatranscriptome	215	Y
F025326	Metagenome / Metatranscriptome	202	Y
F026812	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_1000019540	F025326	AGGAGG	MEGRVMSLTMQQKRGVFWALGIVIVATLTSLAWHQISIALSHCVFTFLK
Ga0126371_1000019548	F026812	AGGAG	VRCSLQRMAVGAAMCLFTIGAATARENMPSCADLRAQKEKVYGFHLTQLNEPQIEAKSKEIDAYWKQLQAAGQEGESCLKDMLASEKSDHLFQFDAASFLYQLDKSPESLAVVKDALVQTDFQETDPANYLSLALELSQRGVDIHALAAKLLLYPNAVIHISEHSLDLDSDTAALFLYGSMEPAQASKALVAKLDAPEPFVRAAAAHLLAEQMTEVALRTLSTWGGLADIKEDYRRNDILAVMKYEAPDAVGLANPKWTREQVLQIIAGLPHTRKEFDDVMSTRGAEFDRQMREKKATQEELAKAVAESEPVYGIADHTAFQNAAVATLKAEDFETVRQARRKSLFNISDESLSEYLAYTQIMIRMLNHLDLYNDYRAH
Ga0126371_1000019552	F022248	AGGAG	MEIMLGFAGLVVMTLLALFAALVLQSALLHAMLWLIQPATADRVPVRVNVAHGAQLVVRALSARQ
Ga0126371_100001958	F000438	AGGAG	MDKFEEMGKRLDEELTRLRKYLEDEVAPVTEKRTAQFLREASEKLSEAARKLEARVAARTSQDSSETKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0126371_10000195

Overview

Ecosystem & Geography

Associated Families

Sequences