Scaffold Ga0126371_10000166

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10000166
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50391
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000260	Metagenome / Metatranscriptome	1431	Y
F000978	Metagenome / Metatranscriptome	815	Y
F011701	Metagenome / Metatranscriptome	288	Y
F013561	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_1000016638	F000978	AGGAG	VRPLCCLRCRREIEAGNKSVAVYMFAQTVGVRPRQKSTAQRICFCPQCAVSLAMGLPPDGALNMVAWDMIRELVSAEPSLNEAAWEGLRGVIGLLPSGNDGEAAPGYRRAG
Ga0126371_1000016645	F013561	GAG	MSDNQVDLIHSFQAFIRAAEQGATIPTVDENDLKVLHELAVDRAKRYCGKDGVISIELTARACSPTANVPAVWLRHTQLRSIFREGRLAEWQRGTMLDQTVFRVAATLPMQGTKLDHDVFIQNLRAATSTSAINH
Ga0126371_1000016651	F011701	AGGAGG	MQSRQSRAWLVCTLLTTLLLVAGAARANSGREFSGYFDISHVQEQGDLVQVTLHLKLFNHSESDARSVIVTLLDSSPAMTLRGNFQPVKVWKSHQFLEMSQEFTVTKREFKEWMTPPAQPNLVILFQDRKGATWQRGAQISRRPLVATQD
Ga0126371_1000016655	F000260	GAGG	MNWKRLALGIFTALAMLALTYLLPRGGTLREASLVQFPMTVGVWAIFVLLFVKLK