Scaffold Ga0126371_10000032

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10000032
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93232
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (76.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001349	Metagenome / Metatranscriptome	717	Y
F001575	Metagenome / Metatranscriptome	669	Y
F025549	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_1000003249	F001575	AGG	MKLESWHSAEDKRRWKIVRTDNYADVPGEIITADETTGECCVQVSGETKTLSFGPCGIRIVGR
Ga0126371_1000003258	F025549	AGGAG	MAEEDSGIPQFSEPATIDQLIEGWWADHFPGSPVARDTQAWNVAHAAKERLKRLLKGSM
Ga0126371_1000003293	F001349	GGAGG	MSRPRAADDFATIRSRMEELRRERMREQATQAADTGVAGHRGPCACGRSLFPDECDGSCK