NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_11545899

Scaffold Ga0210409_11545899


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_11545899 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052049Metagenome / Metatranscriptome143Y
F060763Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_115458991F060763AGGMANHAYLRVWTRDFSLETMLAEFARFLTTAPLSTTQNSFTELVVQAVDPTEIPVAEWDLRPLKLGP
Ga0210409_115458992F052049N/ASNQWMLATVASLDHQSREMVSGIAATAEEKLREACAHVFEGVGESLRDRLREMAQSFTPPAQPPDRAKSANMGS

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