Scaffold Ga0210409

Basic Information
Taxon OID	3300021559 Open in IMG/M
Scaffold ID	Ga0210409_10031497 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5096
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5096

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_100314973	F014639	AGGAG	MSETTQSTNTPASSETGFLKRKWKSIFFFFAKHAFESKLEGILRAAVGHEGNSLPAGDHQYQLLNTEAGSLCTEFANRWGLNIELLKARIAGLAKLKRLSVPPQTMNYSRLAWLGMLAIPVLCLLAGAAAGLVNLGFHLVGGR
Ga0210409_100314974	F025336	GGAGG	MVIALIAAAEAMLFSASGTKRNQARRQQILMGSSLDSERCLPIVDEYLKRKTANANRVQVFVASKLAEICRRAVHTRSFEYLLLHVIRTAILKRRNKFLNPEGRVL
Ga0210409_100314975	F013913	GGAGG	MNLTPSTKGSFIAGVGLWVLLWASLFKADEIAQAGGFQRWVSSDRCLRWIRNHKSTSLIGTEIINYSHTGVDPLGVTFALGGTLVNVLVIYVLLPMLDRARRGGAVLNLDL
Ga0210409_100314976	F054526	AGGAG	MSNPQQEVSTPDLIEQVIGSGLFSFDDEPHFTWQGCEHCADGLGAKVYDLRGYRSLEHRELYEFQVCGDCINNQYYGGN
Ga0210409_100314977	F020887	GGAGG	MRKTITLYGEVAGNIWMPAVERTKEFRLELKRIPRNSTTCTHPGIAPRSMEITCLRDALIHVTNDGDFQSCSITWAVLEVSHYFGDETAGSRTSKTRTRVWELRGQGENADCFADSRFNRHSRARNCFN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210409_10031497

Overview

Ecosystem & Geography

Associated Families

Sequences