NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10019068

Scaffold Ga0210409_10019068


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10019068 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6697
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y
F002853Metagenome / Metatranscriptome526Y
F073888Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_100190683F000781GGTGGMLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSPIASVSVQASNGWFDISVTDPSEARPGLFYFAESDTTPAFGAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPTAVSGGGASGPTPLPSSGSGVFPNGVPRSGNGFGIHPGSRITRQSIL
Ga0210409_100190684F000703N/AMQIRQYQERDLDALRAIHATQGFDYALPDLQNPLFVTKLVLAQHARPSVVGAQHAAPLQQPSTALGDLVEGDSQNADPAPSSDKILGAVLLRLTAEAYLLLDPGAGTPRERWQWLLALQTAAERDAWQRGLEDVHAWLPPPIAHKFGKRIQRLGWLRDDAWTPYCKKLSAGK
Ga0210409_100190685F002853GGAGGMGRGAQSQTRQLTDDQLASLNSLNQQFLGQQQQIGNTLLPQFQSILNNPGLSVADKAAVTGQSQGSLASAFDSLQQSAQNRLARTRNPAGFGELTDELARQKGIAEAGQTQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRNNASRTTGNGFFSALGSGVGSALGALPGAFF
Ga0210409_100190686F000624AGGAMPTHWYAVLTAIFTIGVQFVIFLRWLHRRMRKDEIAHAFIHDIATNHLPHIYNALQQIASRQGIRLDDIPMVRFVDLNDHRRNKR
Ga0210409_100190688F073888N/AMPTRDWIRLAELTAALLLALAVFFSWRADRRDRSQLESELAATKQLLAAADTRQHDRDAQLAQTLATLAAEKRTIVTPAQIIHDLPTQLPLPSPIVLQSAPASPSSPSPKTNAVIPAEDLKPLYDFTIDCKACQSRLTTAQADLTDEHQKTVALTRERDDALRIARGGSILRRITRAAKWFLIGAAAGAIAAKAAH

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