Scaffold Ga0210409_10004965

Overview

Basic Information

• Taxon OID: 3300021559
• Scaffold ID: Ga0210409_10004965
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14089
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000274	Metagenome / Metatranscriptome	1399	Y
F020584	Metagenome / Metatranscriptome	223	Y
F030232	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_100049651	F000274	GGAGG	MKVKIAMAVLALFMFACAAGMATAQDAAKTTHKKVRTLTGCLQKGDDANEYQLTTAKGGTWEITSDSLKLGDHLGHTVRITGVVPNAKMHGMKEDAKAEAKEHGMAKNSTEHGHLTVTDLTMVSETCKK
Ga0210409_100049655	F020584	GGA	MEKLQALQAAARQGGFIQVEESGEGTVLWLRKEKADAATKTHKRICIDSLSNSLTVYWMTAPGKIDSKTFRNAPSLQEWFALQPAE
Ga0210409_100049656	F030232	N/A	MTNREAILRLSVNTGDAPAMTSLRDNNTTAIRAAVTRYFGVGPAADKAESVIMQRTADHAHSYERQENADTWLARCVNAECDRLRNEGIYDKANRD