NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10002644

Scaffold Ga0210409_10002644


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10002644 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21067
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000611Metagenome / Metatranscriptome987Y
F007216Metagenome / Metatranscriptome355Y
F009672Metagenome / Metatranscriptome314N

Sequences

Protein IDFamilyRBSSequence
Ga0210409_1000264411F000611AGTAGMQTNMNFPTYVFATVNSGRGTKVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGIQPTKKLESQMALGVSVLTCEHNTSESVIKQLSNIPGFIEASTVPGQFDIVALWQAKTSEDIVKNSVERVTSLQGIFKSETLLAYAPFFKA
Ga0210409_1000264418F007216N/AMFDIFRNLGYAWASYGSQVSGGLVFAVIGLMAASLYFCPECATLREAWSRLRSRRSLLIYEGIVFAWVGLNLASPTLFFPFTLVLLSVAAVYPTGLFLSARKRAKPSHVKNSMAMLSVTWALFVTVGTVLFALGAQPPVLPVSLPYGWEISFITGSALFFLMSTTDAFTLSAVRFSSGQLIQETIVKPGHRYLILHDSGKRAISFLSSTLKGLIESGAKVVISASSNGWLVGNLSQYESHFSEWKENGRVVVSESEGGHNLQHEGFSDRLSFGPTSTVFVNELGQDNLAGVVSSVSSGTEEKHQQPAELFLLESSKAPRPQLTEFLRRNTGMELLNLSESTDPFSSIVDLDHQKIRGSIILLEYDTNSDYEGVVDKFLAEGISNAELCVLFTTKSSKLYRAIKGKRMIKIIAASSLISVPDELPDGETQIPDKELGLVAAVLSDFIDNSKNSGASFVFDSITELIRGERWEQVYSGIKQLIDLLSVPNATALFLANVNTMEPRFLGALHGAFALQLRLDSQGLKAVKVPVN
Ga0210409_100026446F009672AGGMSMGLLDTSPRWLSLSLGCSAGALVVAGVGFFFGQLTLFDITPFTLLLHLVLALAVSALILNLRIKISPDRKPLLAIGVAVVVGSIWSSVQQWIGYFQTGSTSDIILVAGATLMDIAGGCVIYSLFHLNVLKKTS

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