Scaffold Ga0210409

Basic Information
Taxon OID	3300021559 Open in IMG/M
Scaffold ID	Ga0210409_10002644 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21067
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (68.18%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

21067

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (68.18%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F007216	Metagenome / Metatranscriptome	355	Y
F009672	Metagenome / Metatranscriptome	314	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_1000264411	F000611	AGTAG	MQTNMNFPTYVFATVNSGRGTKVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGIQPTKKLESQMALGVSVLTCEHNTSESVIKQLSNIPGFIEASTVPGQFDIVALWQAKTSEDIVKNSVERVTSLQGIFKSETLLAYAPFFKA
Ga0210409_1000264418	F007216	N/A	MFDIFRNLGYAWASYGSQVSGGLVFAVIGLMAASLYFCPECATLREAWSRLRSRRSLLIYEGIVFAWVGLNLASPTLFFPFTLVLLSVAAVYPTGLFLSARKRAKPSHVKNSMAMLSVTWALFVTVGTVLFALGAQPPVLPVSLPYGWEISFITGSALFFLMSTTDAFTLSAVRFSSGQLIQETIVKPGHRYLILHDSGKRAISFLSSTLKGLIESGAKVVISASSNGWLVGNLSQYESHFSEWKENGRVVVSESEGGHNLQHEGFSDRLSFGPTSTVFVNELGQDNLAGVVSSVSSGTEEKHQQPAELFLLESSKAPRPQLTEFLRRNTGMELLNLSESTDPFSSIVDLDHQKIRGSIILLEYDTNSDYEGVVDKFLAEGISNAELCVLFTTKSSKLYRAIKGKRMIKIIAASSLISVPDELPDGETQIPDKELGLVAAVLSDFIDNSKNSGASFVFDSITELIRGERWEQVYSGIKQLIDLLSVPNATALFLANVNTMEPRFLGALHGAFALQLRLDSQGLKAVKVPVN
Ga0210409_100026446	F009672	AGG	MSMGLLDTSPRWLSLSLGCSAGALVVAGVGFFFGQLTLFDITPFTLLLHLVLALAVSALILNLRIKISPDRKPLLAIGVAVVVGSIWSSVQQWIGYFQTGSTSDIILVAGATLMDIAGGCVIYSLFHLNVLKKTS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210409_10002644

Overview

Ecosystem & Geography

Associated Families

Sequences