Scaffold Ga0210409

Basic Information
Taxon OID	3300021559 Open in IMG/M
Scaffold ID	Ga0210409_10001313 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33073
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (45.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

33073

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (45.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F006466	Metagenome	372	Y
F010312	Metagenome	305	N
F012762	Metagenome	277	Y
F014110	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_1000131315	F006466	N/A	VVAIVGIGGMLLRNRTAVWLASVSLLLLIVWGKIAGDINGLPGPDSALLLFQFMSVIFLMEASTTILTFDSAVNPLAGKNDDLSARARMQLVKWEQVQLFSLGKLTVASFGLSLGLLILGSLVSVSFNQIAFSGVLVLAAVVAIFILLTYRREPEERKRSLD
Ga0210409_100013134	F006299	N/A	MTVSPEVLLRDVPEIVEFNQLKGRTTAEALTDLVNEFGIVYVTALTRQGCSGCETQKPLFKTLAEKMTGENATRVRFRSFHVNYQDGDKRESWRSKGIFGHAAYPTYMIHVKSHVGPLEIYRSVYPPMEELERQIKESFELADFYKTEAENGSRRSSERL
Ga0210409_100013135	F014110	GGA	MKKEQQIVDLGKLPDKTGVAVDFLREHVKSVNGRVSTKGNQIQVEGLKHKEVKLLMHKFLRHNGLDDHRVLSQGGTLEIVPQHLVVHSRPQEGTPPPASATMPYLFPGASAAVPTSKKSKKS
Ga0210409_100013137	F010312	GAG	MLRVFRLTLPAALLVSLTWMTLFTDTARQAVINSLGANANIIIFILGLFLVIGLYWVMGVYERKILYENHRTRPAF
Ga0210409_100013139	F012762	GAG	LPTLLEEDPSLGTVDNFPTVLHARASFSFDINPESLQKALVSALASLRTNPKPREITIADRDGYLKGQLIFRPGIGNGDGFDVLDPKEEERVLHRIENRGSFSTLDLAIQLHYSVNDTGQHRVREDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELIKIIIQELNVELTRDRYGQIELETINIT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210409_10001313

Overview

Ecosystem & Geography

Associated Families

Sequences