Scaffold Ga0210409_10000833

Overview

Basic Information

• Taxon OID: 3300021559
• Scaffold ID: Ga0210409_10000833
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44456
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (89.13%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000180	Metagenome / Metatranscriptome	1730	Y
F017202	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_100008332	F017202	N/A	VVIRRFEDGGSHGAKFDAKYTYVTEICVTGFNERTDEIERWRSSEIVGFSAARLRAEAREAELYQAIVDLSREGFLAGNFDLRSLFSVLLDRFYSEAFVLCLGAEVTNGRTAAFQRMADVLEPTNTLFEMGLASIVSFRPTASAQDAEGNFTTDWETVFGGTYPTGIAVRWRTVRAWKSRKVIAERIEDLPSPKP
Ga0210409_1000083328	F000180	GGA	MSHSPTKGTAVVQRSLISADHCGCDPYTNSHTAERALNAAIANARISESFEEYLEIFNEFYADDIEVSSEAHEEPVRGKATVCSLLFDFLAPLHAMAEVGGLLISIRGSAIGGDAADETHSEWTLDLVGVTGRTCTLSWRALRKWNGSRVVFEHHYDQQQNGEPLTLGDLSFKEVKVAARFQRPS