Scaffold Ga0210409_10000647

Overview

Basic Information

• Taxon OID: 3300021559
• Scaffold ID: Ga0210409_10000647
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52771
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (63.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003600	Metagenome / Metatranscriptome	477	Y
F008301	Metagenome / Metatranscriptome	335	Y
F093565	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_1000064726	F093565	N/A	VALHEIVAVPDPVMLLGVMVPHVSPVGIVSLRLTDPAKWFTAVRVIVELAELPVLIGAGEVAAIVKSRNWKSAVAEWIREALAPVTVRV
Ga0210409_1000064749	F003600	AGG	MPSSSMSETLDMHRLKAEHMLRRARLAALGESVVILTLLVWLSLEFENNFYMQQWIAAHFWPAQWLLNGTLVGLASGLLAGWVLATWQGKRSREQKILDDLRKIV
Ga0210409_100006479	F008301	N/A	MGKLMISLSDQSENLVRSEVQRVYHGRVGGLSIFFEQVLRDYFHDNGKATKSTRTKNGKN