Scaffold Ga0210409_10000564

Overview

Basic Information

• Taxon OID: 3300021559
• Scaffold ID: Ga0210409_10000564
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57728
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (89.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005312	Metagenome / Metatranscriptome	405	Y
F009363	Metagenome / Metatranscriptome	319	Y
F012154	Metagenome / Metatranscriptome	283	Y
F029234	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_1000056430	F029234	GAGG	MMMEAERQTFRGVVCLHCKAPIPVPAIVGSPQASGNDGTESSQRKSQVFNIRCPQCHKEKPYRTREIVDFEGTAEAAMAPEPPAPLPWYPQNGMTRAAKA
Ga0210409_1000056433	F012154	AGGAGG	MPDLGPERTVDEHGAAVLLGITPPEVRWFSRVLGLGRKQEGGGSARIVFTYDELKRLSSAAAASAK
Ga0210409_100005647	F005312	N/A	MARYSAILGRRIVVTYRAGEIVLPATGELAADSGKSIFLEESYRQQGKVKTFRWEIPYPSIVELHESPEIPKPSASVNEPRDSSAESARQPNALELKNRPA
Ga0210409_100005648	F009363	GGAGG	VAVRICPHCKTEIPAPEAAAYSNDIVCPKCGTHLEVAPGSRTISTLCGLAAGAIAWRLSSGSTSDLGGVLPALYAFLAFGIVSPLVLMFTANLRNAPLVPVPEPAHAPASAGHDAGGHGGGHH