Scaffold Ga0210409_10000132

Overview

Basic Information

• Taxon OID: 3300021559
• Scaffold ID: Ga0210409_10000132
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 163582
• Total Scaffold Genes: 151
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (80.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003384	Metagenome / Metatranscriptome	490	Y
F012495	Metagenome / Metatranscriptome	280	Y
F027941	Metagenome / Metatranscriptome	193	Y
F035459	Metagenome / Metatranscriptome	172	Y
F084683	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_10000132141	F027941	AGGAG	MNKVAIYAGLFAVLASPFAALAAPAAQSSAKSGSSNVTITGRVSCSRFGLGSVTPRKGMSVAQTIQYCATFQGADFTLVSGNQIFRLTGDKNLLAKMSGQTVTVGGHLNTDEPAGTSYALMGTVEATSVAPAKN
Ga0210409_100001325	F003384	AGGAGG	MKPETMITTTQDRLATCEEVRRATSRTPDRVLELCHTHGKYCQMDSDLGGIIRYPAEEFEFFAYLSDMDESVPN
Ga0210409_1000013258	F035459	GAGG	MNFIFSGYRKGRPAAQRRMVGAALSVAFVIIGASPLAPWVRAQNAGDPAAEFKRISEELSAARLAGEEANEAQMQKALAYLDSIAVSILNSPAGPNLDGANRSLAAIVSHMPPVGENYRLVKLGGNPPTYAMAINFGLGGPAAVRVYAGSAGHYALAARIDHFVQKDFFDSDLELAPVSDAEPVFVTVSGRTDDLSTGLFSAWRFDGHGVVALWNSDLVQQSSYEASENAFRLAYCSQVDEDHPSECLRMSRDVYRFQAGEWKRVETEDLPPSKPIVK
Ga0210409_1000013262	F084683	GGA	MNHLESFLNWSTISFEIVLCGFVFARRVQRVLPLFAVYTCVLLACGIGVSLTYAYYGFSSLTAYYAYWSSILLSAAVRSLAIAELCRFGLRAYRGIWALVWRILTVLSVLLLAHAASDAWGQPNGVAIYGTTLDRDLAFASIIVLAVLLLIRNYYGLALEPFQRAIAAGICFICAVDVIGNTIKRELYTGYLFPWFLTSQKSLWPALRPQIMRVNDFWSTVHLFSFMFSMGIWCYAFRKPLPAPSESPVLLPAGVYREMSPAINLRLATFNDRLVELLKP
Ga0210409_1000013263	F012495	GAG	MNDMSIVILVAIVLCGVVPWLLIPRRKSSTADVSSYHPNLMETLPTARHYAYFRQIRQALSAADSNYLMENASPQVAKQALQKRRAVARSFLKGLHEDFSNLTRLGRIIAALSPEVSRKQETERLMLAVKFQILYTLVLLRLSTGNLPLEQLEYLTGLVGRLATRLDAAMTEVNALSAGQIPGRIGV