NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224713_1099374

Scaffold Ga0224713_1099374


Overview

Basic Information
Taxon OID3300021554 Open in IMG/M
Scaffold IDGa0224713_1099374 Open in IMG/M
Source Dataset NameMarine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - St7is 200bp no Eukaryotes last
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)893
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Stylissa Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina, Papua New Guinea
CoordinatesLat. (o)-0.940556Long. (o)150.816667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020857Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0224713_10993741F020857AGGAMKMNFTVTAAPPFVHPMTSLPATPTNYVRKYGFFSEPTRRRQVAKYGNLKRCESLSFSGDRELIERSKLDSLKSSHADNGVIIE

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