NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224701_1057528

Scaffold Ga0224701_1057528


Overview

Basic Information
Taxon OID3300021547 Open in IMG/M
Scaffold IDGa0224701_1057528 Open in IMG/M
Source Dataset NameMarine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg23is 200bp no Eukaryotes last
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1280
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065466Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0224701_10575282F065466GAGGMNMLLCLLSALVEVHSQTVPYVSFMGTDLPNHSYVDLTLVGWNTDGRDSVHCHTNLSTCCTSVQGDDRGDWYFPNGNKLQFKGDGGIIYESRGEKVVYLRRRNNRDTSGIYRCDIEINAVHSDDDSDTTAWETVYAGLYASGGECLQFHLK

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