Scaffold Ga0224701_1057528

Overview

Basic Information

• Taxon OID: 3300021547
• Scaffold ID: Ga0224701_1057528
• Source Dataset Name: Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg23is 200bp no Eukaryotes last
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1280
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065466	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224701_10575282	F065466	GAGG	MNMLLCLLSALVEVHSQTVPYVSFMGTDLPNHSYVDLTLVGWNTDGRDSVHCHTNLSTCCTSVQGDDRGDWYFPNGNKLQFKGDGGIIYESRGEKVVYLRRRNNRDTSGIYRCDIEINAVHSDDDSDTTAWETVYAGLYASGGECLQFHLK